The Local Run Manager RNA Fusion Module generates a summary report of fusions. MiniSeq System-The Local Run Manager RNA Fusion Analysis Module performs alignment with STAR and analyzes for gene fusions with Manta. VariantStudio filters results using various filtering options, classifies variants according to their biological impact, and exports results to a report. VariantStudio imports variant call files generated during analysis of sequencing data and provides commands to annotate variants. The Illumina VariantStudio desktop application is available with purchase of TruSight panels and includes a one-year license to the VariantStudio desktop application. The Illumina Amplicon Viewer performs data visualization from multiple runs and custom report generation off the instrument. The MiSeq Reporter also creates an assembly for each amplicon (on a per sample basis), performs SNP calling, and generates graphs and reports including the sequencing coverage per amplicon. The MiSeq Reporter is simple, on-instrument software that demultiplexes indexes and samples, performs alignment of reads, and creates a variant report immediately upon completion of each sequencing run. The following software tools are available for TruSight DNA Amplicon: Illumina Experiment Manager, MiSeq Reporter, Illumina Amplicon Viewer, and VariantStudio.
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